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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8718550_8721423_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8718550 - 8721423
Intron Length:
2874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
CATATCATATCT
Flanking Amino Acid:
GNNSTEYGNQGNSYQGHGNF
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
79.4
0.73
1
80.1
32
Major PPT
81.7
0.71
0.8
74
36.7
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
47.6
-0.1
1.9
66.5
43.8

Associated Gene:

Gene:
ZMIZ1
Ensembl Gene ID:
ENSAPLG00000016338
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024533
8439055 - 8732374
293320
ENSAPLT00000017059
8651532 - 8731564
80033