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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8727543_8731456_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8727543 - 8731456
Intron Length:
3914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTATCTGTAATT
Flanking Amino Acid:
APDMPEPSLDLLPELTNPDE
Intron Amino Acid Position:
936

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.7
41.5
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
81.7
0.71
0.8
76.9
36.8
Minor 5ss
40.3
-1.1
3.1
54.9
42.3
Minor BPS
65
0.55
2
84.32
36.9

Associated Gene:

Gene:
ZMIZ1
Ensembl Gene ID:
ENSAPLG00000016338
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024533
8439055 - 8732374
293320
ENSAPLT00000017059
8651532 - 8731564
80033