About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8745576_8745860_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8745576 - 8745860
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGGGG
5'SS Class:
major
3'SS Sequence:
ATTTCTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATTTCTTCAACA
Flanking Amino Acid:
EQPLGRVVLELKADVVPKTA
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
55
44.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.5
0.64
0.9
74.4
34.5
Minor 5ss
22.1
-3.2
3.4
28.8
43.7
Minor BPS
74.1
0.75
1.4
82.18
32.4

Associated Gene:

Gene:
PPIF
Ensembl Gene ID:
ENSAPLG00000002400
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002421
8745423 - 8751248
5826