About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8745892_8746710_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8745892 - 8746710
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAT
5'SS Class:
major
3'SS Sequence:
TTTGTTTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACATAC
U12 Branch Point Sequence:
TGTATGGGAACA
Flanking Amino Acid:
LKADVVPKTAENFRALCTGE
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.6
42.7
Major BPS
49.1
-0
0.9
44.7
27.8
Major PPT
85
0.79
0.8
80.9
31.1
Minor 5ss
31
-2.2
3.6
46.2
49.1
Minor BPS
40.1
-0.7
2.5
57.23
42

Associated Gene:

Gene:
PPIF
Ensembl Gene ID:
ENSAPLG00000002400
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002421
8745423 - 8751248
5826