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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8749371_8750178_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8749371 - 8750178
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GCTGCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GATCTAATAACC
Flanking Amino Acid:
ENFILKHVGPGVLSMANAGP
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
71.3
0.48
1
61
44.6
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
47.7
-0.1
1.8
60.37
37.5

Associated Gene:

Gene:
PPIF
Ensembl Gene ID:
ENSAPLG00000002400
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002421
8745423 - 8751248
5826