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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8763220_8766800_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8763220 - 8766800
Intron Length:
3581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTTCTTG
5'SS Class:
weak_major
3'SS Sequence:
TGCAACATGTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AGCCCTGCAACA
Flanking Amino Acid:
THVSPSTDLQWGFIHLELIT
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.1
53
40.4
Major BPS
77.3
0.68
1
81.5
27
Major PPT
48.8
-0
1.2
49.8
42.6
Minor 5ss
48.3
-0.1
2.7
60.9
46
Minor BPS
43.4
-0.5
2.1
52.08
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022463
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029895
8762865 - 8766913
4049