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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8778291_8788811_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8778291 - 8788811
Intron Length:
10521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CAGATCTTATTT
Flanking Amino Acid:
CHINVYPHKQRPLEKPDGLD
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
88.1
0.86
0.8
83.9
31.1
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
49.2
0.02
1.6
60.93
43.3

Associated Gene:

Gene:
ZCCHC24
Ensembl Gene ID:
ENSAPLG00000002432
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048181
8777177 - 8882822
105646