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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8788977_8864943_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8788977 - 8864943
Intron Length:
75967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TTTCTGGTCACT
Flanking Amino Acid:
KGHYIKDCPQARPKGEGLTP
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
86.1
0.81
0.8
83.6
31.4
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
42.1
-0.5
2.8
72.32
44.9

Associated Gene:

Gene:
ZCCHC24
Ensembl Gene ID:
ENSAPLG00000002432
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048181
8777177 - 8882822
105646
ENSAPLT00000002438
8785355 - 8882822
97468