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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8865145_8882582_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8865145 - 8882582
Intron Length:
17438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATGTAAGT
Flanking Amino Acid:
NSFFQLQRSEALSSSLYKSA
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
46.7
-0.1
2.4
73.99
42.9

Associated Gene:

Gene:
ZCCHC24
Ensembl Gene ID:
ENSAPLG00000002432
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048181
8777177 - 8882822
105646
ENSAPLT00000002438
8785355 - 8882822
97468