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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8939605_8940690_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8939605 - 8940690
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTA
5'SS Class:
major
3'SS Sequence:
GCTTTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
TGTGCTTTGTTT
Flanking Amino Acid:
DAYEIKEAIKGVGTDENCLI
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
75.3
34.3
Major BPS
62.2
0.3
1
59
38
Major PPT
79.2
0.66
0.9
76.9
37.3
Minor 5ss
38.7
-1.3
3
49.8
46.5
Minor BPS
42.7
-0.4
3.4
70.84
41.1

Associated Gene:

Gene:
ANXA11
Ensembl Gene ID:
ENSAPLG00000002433
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002528
8922354 - 8948880
26527