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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8978341_8984823_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8978341 - 8984823
Intron Length:
6483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCTTTCCTAACA
Flanking Amino Acid:
LVVYLFAMLYRDDNKINKRD
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
63.8
0.43
1.7
72.44
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003693
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019023
8977484 - 8999440
21957