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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8985167_8988420_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8985167 - 8988420
Intron Length:
3254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGGAAT
5'SS Class:
major
3'SS Sequence:
TTCTATATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
GTTTCTATATTC
Flanking Amino Acid:
QSGVQKTPCMYSRLSKQYGV
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
71.3
40.1
Major BPS
78.3
0.7
1
80
32.1
Major PPT
82.3
0.73
0.9
73.9
40.1
Minor 5ss
32.7
-2
3.5
44.4
44.8
Minor BPS
52.5
0.06
1.8
67.84
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003693
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034746
8977484 - 8999440
21957
ENSAPLT00000019023
8977484 - 8999440
21957
ENSAPLT00000003776
8977484 - 9005520
28037