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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8989647_8994385_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8989647 - 8994385
Intron Length:
4739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAGAT
U12 Branch Point Sequence:
TTCTGCTGAGAT
Flanking Amino Acid:
AQENGYLYLEEEDSAVYLSG
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
51.7
0.04
1.3
50.1
44.2
Major PPT
85.7
0.8
0.7
80.9
24.3
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
46.7
-0.1
2.2
70.15
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003693
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003776
8977484 - 9005520
28037
ENSAPLT00000034746
8977484 - 8999440
21957
ENSAPLT00000019023
8977484 - 8999440
21957