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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8994552_8995880_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8994552 - 8995880
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTGTATTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGATCACTAAAA
Flanking Amino Acid:
KHLNPHISVIGVESESFPVL
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77
32.4
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
77.6
0.62
0.9
69.8
41.2
Minor 5ss
47.3
-0.3
2.8
67.6
37.4
Minor BPS
48.9
-0
2
65.18
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003693
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019023
8977484 - 8999440
21957
ENSAPLT00000003776
8977484 - 9005520
28037
ENSAPLT00000034746
8977484 - 8999440
21957