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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8995978_8996901_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8995978 - 8996901
Intron Length:
924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGAAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTATTTTGAAAT
Flanking Amino Acid:
QACSNHHFYGDVSGLCFGNN
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75
0.56
1
67.5
42.4
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
56
0.27
1.5
71.62
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003693
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019023
8977484 - 8999440
21957
ENSAPLT00000003776
8977484 - 9005520
28037
ENSAPLT00000034746
8977484 - 8999440
21957