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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8998876_8999199_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8998876 - 8999199
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCCA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATCCCTTAATT
Flanking Amino Acid:
LLEILAREEARVLDIKQERM
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
74
36.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.9
0.56
1
74.5
40.2
Minor 5ss
33.9
-1.8
2.9
42.4
44.3
Minor BPS
83.3
1.12
1
91.11
31.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003693
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003776
8977484 - 9005520
28037
ENSAPLT00000034746
8977484 - 8999440
21957
ENSAPLT00000019023
8977484 - 8999440
21957