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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_8999258_9005421_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8999258 - 9005421
Intron Length:
6164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ATGCTCCTAATT
Flanking Amino Acid:
FVTSELFSVEVTCTVETRDK
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
84.1
0.77
0.8
76.9
36.6
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
55.7
0.26
1.7
72.2
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003693
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003776
8977484 - 9005520
28037