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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9017713_9018492_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9017713 - 9018492
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TCTTTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTTATCA
Flanking Amino Acid:
AEHYHTWVCYAFYVSWLIHL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
69.3
38.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
88
0.86
0.8
89.1
26.1
Minor 5ss
41.4
-1
2.8
48.1
41.4
Minor BPS
65.6
0.49
1.5
74.08
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021396
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040910
9015067 - 9018807
3741