Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9034731_9035875_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9034731 - 9035875

Intron Length:

1145

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTGTGTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGATGAT

U12 Branch Point Sequence:

TTCCAGTGAAAC

Flanking Amino Acid:

MIDLAKVADLVLMLIDASFG

Intron Amino Acid Position:

152

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

26.1

Major BPS

57.1

0.18

1.3

49.1

44.8

Major PPT

83.9

0.76

0.9

81.2

36.5

Minor 5ss

39.7

-1.2

2.8

45.9

43.7

Minor BPS

41.8

-0.6

2.2

55.27

42.2

Associated Gene:

Gene:

BMS1

Ensembl Gene ID:

ENSAPLG00000003759

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003906

9032260 - 9054494

22235