Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9036731_9037921_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9036731 - 9037921

Intron Length:

1191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TAATGTTGGGTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATG

Flanking Amino Acid:

QTSHPYVLADRMEDLTNPED

Intron Amino Acid Position:

262

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

76.6

31.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

57.3

0.17

1.1

54.6

45.3

Minor 5ss

-1.6

3.2

49.9

46.5

Minor BPS

0.74

1.1

78.3

32.8

Associated Gene:

Gene:

BMS1

Ensembl Gene ID:

ENSAPLG00000003759

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003906

9032260 - 9054494

22235