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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9038896_9039559_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9038896 - 9039559
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCATCCTAATT
Flanking Amino Acid:
GGSHAHENKEEDVRPNHELV
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
77.3
0.61
1
70.3
44.5
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
58.9
0.36
1.7
76.82
40.1

Associated Gene:

Gene:
BMS1
Ensembl Gene ID:
ENSAPLG00000003759
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003906
9032260 - 9054494
22235