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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9041064_9041935_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9041064 - 9041935
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACTCT
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
TTTTCCTTTTCA
Flanking Amino Acid:
EKTDFSADTAGALKWKEDLT
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
65.7
41
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
44.4
-0.6
3.3
65.3
46.1
Minor BPS
49.3
-0
3.6
83.52
37

Associated Gene:

Gene:
BMS1
Ensembl Gene ID:
ENSAPLG00000003759
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003906
9032260 - 9054494
22235