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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9042038_9043176_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9042038 - 9043176
Intron Length:
1139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGATT
5'SS Class:
major
3'SS Sequence:
ATGTTTCATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ATGTAATCAACT
Flanking Amino Acid:
PNLRKLVYGTVIEDNEHESE
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
76
39.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
72
0.49
0.9
67.5
38.8
Minor 5ss
36.5
-1.5
3.6
57
47.3
Minor BPS
50.1
0.08
2
73.45
42.7

Associated Gene:

Gene:
BMS1
Ensembl Gene ID:
ENSAPLG00000003759
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003906
9032260 - 9054494
22235