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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9043335_9043882_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9043335 - 9043882
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCAC
5'SS Class:
major
3'SS Sequence:
TCCTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
CTGTTATCAACT
Flanking Amino Acid:
EKPQDWDLEEVMSSIKDCFV
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
65.9
39.9
Major BPS
79
0.72
1
80.3
31.7
Major PPT
85
0.79
0.8
79.8
31.8
Minor 5ss
31.1
-2.2
3.3
41.5
45.2
Minor BPS
53.7
0.2
1.9
72.84
44

Associated Gene:

Gene:
BMS1
Ensembl Gene ID:
ENSAPLG00000003759
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003906
9032260 - 9054494
22235