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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9043965_9044922_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9043965 - 9044922
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
GATGTCAGATGT
Flanking Amino Acid:
KDAAKLLEEDEELYGDFEDL
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75.9
33.3
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
88.6
0.87
0.8
84.2
30.7
Minor 5ss
42.5
-0.8
3.1
54.4
45.2
Minor BPS
36.9
-0.9
2
51.27
42.6

Associated Gene:

Gene:
BMS1
Ensembl Gene ID:
ENSAPLG00000003759
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003906
9032260 - 9054494
22235