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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9045000_9045997_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9045000 - 9045997
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACCC
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTGATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTACCTTTGATC
Flanking Amino Acid:
KGKSAAEKDESENEEEGNDG
Intron Amino Acid Position:
821

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
65.2
39.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
69.7
0.44
1
69.8
40
Minor 5ss
39.3
-1.2
3
51.9
44.8
Minor BPS
66.7
0.51
1.2
71.64
33.4

Associated Gene:

Gene:
BMS1
Ensembl Gene ID:
ENSAPLG00000003759
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003906
9032260 - 9054494
22235