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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9046181_9047794_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9046181 - 9047794
Intron Length:
1614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGCT
5'SS Class:
major
3'SS Sequence:
CTTTGACACATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTCTCTTTGACA
Flanking Amino Acid:
LKEEMHKQAQLNRAEFEDQD
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66
38
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
64.7
0.33
0.9
58.7
36.5
Minor 5ss
31.4
-2.1
3.7
48.4
47.3
Minor BPS
78.7
0.9
1.1
82.02
33.2

Associated Gene:

Gene:
BMS1
Ensembl Gene ID:
ENSAPLG00000003759
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003906
9032260 - 9054494
22235