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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9047984_9048597_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9047984 - 9048597
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTAATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTTCTTCTAATT
Flanking Amino Acid:
NSEGNVGYVQLRLKKHRWYK
Intron Amino Acid Position:
945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
73.6
0.53
0.9
75.2
33.5
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
61.7
0.44
1.6
81.49
34

Associated Gene:

Gene:
BMS1
Ensembl Gene ID:
ENSAPLG00000003759
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003906
9032260 - 9054494
22235