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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9052733_9053103_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9052733 - 9053103
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTA
5'SS Class:
strong_major
3'SS Sequence:
TGCATTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGCATCTTATAT
Flanking Amino Acid:
LKQNKDSLYKPIVREKRHFN
Intron Amino Acid Position:
1174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
79.1
30.1
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
74.2
0.55
0.9
65.9
40.8
Minor 5ss
49.2
-0
2.5
66.7
44.7
Minor BPS
49.5
0.05
1.7
66.34
44

Associated Gene:

Gene:
BMS1
Ensembl Gene ID:
ENSAPLG00000003759
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003906
9032260 - 9054494
22235