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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9053266_9053961_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9053266 - 9053961
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GAACTTTCAATT
Flanking Amino Acid:
AVIREPHEKKISALLNALST
Intron Amino Acid Position:
1228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
87.2
27.3
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
85.8
0.8
0.7
85.1
29.7
Minor 5ss
40.4
-1.1
2.8
54.5
42.7
Minor BPS
48.8
-0
1.4
60.32
37

Associated Gene:

Gene:
BMS1
Ensembl Gene ID:
ENSAPLG00000003759
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003906
9032260 - 9054494
22235