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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9145120_9151243_F

Intron Information:

Intron Rank:
135141
Intron Class:
major
Intron Phase:
Intron Coordinates:
9145120 - 9151243
Intron Length:
6124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ACATTTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GATTCTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
76.4
0.6
0.8
74.2
35.7
Minor 5ss
41.2
-1
2.5
51.4
45.1
Minor BPS
59.6
0.38
1.7
75.23
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022712
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027905
9145003 - 9183610
38608