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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_917_1354_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
917 - 1354
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGGGCT
5'SS Class:
major
3'SS Sequence:
GCAATGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TCTCACTTTATG
Flanking Amino Acid:
AIQDKSGRFDMLLCVGNFFG
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
70.5
38.9
Major BPS
75.1
0.62
1
65.6
41
Major PPT
65.9
0.36
1
61.8
44.1
Minor 5ss
33.2
-1.9
3.6
47.1
42
Minor BPS
49.1
-0.2
1.9
57.9
43.6

Associated Gene:

Gene:
CWF19L1
Ensembl Gene ID:
ENSAPLG00000011370
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027241
21 - 14383
14363