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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9183640_9211399_F

Intron Information:

Intron Rank:
135136
Intron Class:
major
Intron Phase:
Intron Coordinates:
9183640 - 9211399
Intron Length:
27760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022712
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021801
9145003 - 9224834
79832
ENSAPLT00000018487
9183438 - 9212313
28876