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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9211478_9224780_F

Intron Information:

Intron Rank:
135139
Intron Class:
major
Intron Phase:
Intron Coordinates:
9211478 - 9224780
Intron Length:
13303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTACACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCCCTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
68
0.41
0.9
61.5
39.3
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
62.7
0.48
2.1
84.58
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022712
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047040
9211310 - 9224909
13600
ENSAPLT00000021801
9145003 - 9224834
79832