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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9253429_9297684_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9253429 - 9297684
Intron Length:
44256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CTTCGAGTAACT
Flanking Amino Acid:
RAAGFLLLCGASFGLYFPRK
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
85.5
0.8
0.7
80
25.3
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
44.4
-0.3
2.5
70.32
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004594
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004771
9253113 - 9335614
82502