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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9297937_9299633_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9297937 - 9299633
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
CATCCATAAAAT
Flanking Amino Acid:
SVDREDFNMLSVGNWMTLSK
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
84.5
0.78
0.9
87.3
23.6
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
46.8
-0.1
2
65.42
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004594
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004771
9253113 - 9335614
82502