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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9300641_9302756_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9300641 - 9302756
Intron Length:
2116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
GATTTCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TCATTTATGATT
Flanking Amino Acid:
DAVVEFNRKEGTVLATLTVC
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
84.6
0.86
1
74
41.2
Major PPT
75.8
0.58
0.9
66.9
40.2
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
50
0.08
1.5
67.35
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004594
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004771
9253113 - 9335614
82502