About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9303655_9309246_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9303655 - 9309246
Intron Length:
5592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGAGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TTCTTTGTGACT
Flanking Amino Acid:
VNRNAERFAQIGKICIENCM
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
62.8
0.29
1
55.2
44.6
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
54.8
0.23
2
77.67
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004594
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004771
9253113 - 9335614
82502