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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9309506_9310563_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9309506 - 9310563
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTCTTCCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTTTACTGAACT
Flanking Amino Acid:
TLLTIVLEGSLLKKEEDCPE
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
71.5
38.5
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
78.2
0.63
0.8
74.2
29.6
Minor 5ss
38.5
-1.3
2.7
48
34.4
Minor BPS
76.3
0.9
1.6
94.51
32

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004594
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004771
9253113 - 9335614
82502