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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9311357_9315212_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9311357 - 9315212
Intron Length:
3856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGGAAA
5'SS Class:
major
3'SS Sequence:
TGTATTTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTGTATTTAATT
Flanking Amino Acid:
DPAVCPQDCTSGNIIGGHGK
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70.3
35.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
67.4
0.39
1
67.8
42.5
Minor 5ss
39.4
-1.2
3.1
47.8
42.6
Minor BPS
65
0.55
1.5
76.19
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004594
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004771
9253113 - 9335614
82502