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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9315333_9316882_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9315333 - 9316882
Intron Length:
1550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTTCTTGATC
Flanking Amino Acid:
NCYCEKDDIKEQLCDDVCKT
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.6
93.2
14.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
75.6
0.58
0.9
69
36.1
Minor 5ss
43.8
-0.7
2.8
58.1
46.5
Minor BPS
73.1
0.71
1.1
76.64
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004594
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004771
9253113 - 9335614
82502