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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9318558_9322215_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9318558 - 9322215
Intron Length:
3658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTCC
5'SS Class:
major
3'SS Sequence:
TGGACACCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTTTCCTAACCA
Flanking Amino Acid:
YTTVAVKMLKENASQSELRD
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
66.9
39.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
64.5
0.33
1
55.7
40.2
Minor 5ss
45.9
-0.4
2.8
62.9
41.7
Minor BPS
60.3
0.32
2
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004594
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004771
9253113 - 9335614
82502