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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9325803_9330023_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9325803 - 9330023
Intron Length:
4221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
CTGTATATAAAA
Flanking Amino Acid:
FDHIYTTQSDVWSFGVLLWE
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
75.2
35.8
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
95.9
1.03
0.5
95.6
15.1
Minor 5ss
46.7
-0.3
2.8
62.5
42.2
Minor BPS
46.8
-0.2
1.9
58.31
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004594
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004771
9253113 - 9335614
82502