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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9330162_9332242_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9330162 - 9332242
Intron Length:
2081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTGGGAATCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTCTCCACCT
Flanking Amino Acid:
MERPENCSEEMYNLMLRCWK
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
56.7
0.15
1.1
47.1
44
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
50.8
0.1
2.1
80.84
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004594
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004771
9253113 - 9335614
82502