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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9333536_9335439_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9333536 - 9335439
Intron Length:
1904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGAATTT
5'SS Class:
major
3'SS Sequence:
TTTTCATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTGTTTTCATT
Flanking Amino Acid:
PSTWIENKLYGMSYPNWPEE
Intron Amino Acid Position:
1054

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.1
67.6
38.4
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
85.9
27.3
Minor 5ss
42
-0.9
3.6
61.1
45.8
Minor BPS
50.4
0.09
1.8
69.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004594
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004771
9253113 - 9335614
82502