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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9356109_9364948_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9356109 - 9364948
Intron Length:
8840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTAATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.8
0.69
0.8
78.9
33.2
Minor 5ss
35.7
-1.6
2.6
42.3
44.5
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
CSGALNACT2
Ensembl Gene ID:
ENSAPLG00000004921
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005083
9355994 - 9378882
22889