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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9371900_9372435_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9371900 - 9372435
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAATAACTAATA
Flanking Amino Acid:
EAFAQFMQNFRDVCIHQDKR
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
78.1
0.63
0.9
72.2
38
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
46.5
-0.2
2
61.09
38

Associated Gene:

Gene:
CSGALNACT2
Ensembl Gene ID:
ENSAPLG00000004921
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005083
9355994 - 9378882
22889