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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9372538_9374164_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9372538 - 9374164
Intron Length:
1627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
ATGGATTTATTT
Flanking Amino Acid:
EVKNILESVARETNFHNYTL
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
84.9
0.79
0.7
77.9
36.6
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
46.9
-0.1
1.8
62.52
42.4

Associated Gene:

Gene:
CSGALNACT2
Ensembl Gene ID:
ENSAPLG00000004921
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005083
9355994 - 9378882
22889