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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9375971_9377354_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9375971 - 9377354
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTAAAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTAAAATAACT
Flanking Amino Acid:
DIPPPVEQQLVHKKDSGFWR
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.9
0.47
1
64.2
41.2
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
51.3
0.12
2.1
80.75
39.9

Associated Gene:

Gene:
CSGALNACT2
Ensembl Gene ID:
ENSAPLG00000004921
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005083
9355994 - 9378882
22889