Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9390309_9390548_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9390309 - 9390548

Intron Length:

240

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATCC

5'SS Class:

strong_major

3'SS Sequence:

TTGTATTTACTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

TTGTCCTTATTG

Flanking Amino Acid:

LLTAPIYSEEALFIASFESE

Intron Amino Acid Position:

452

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

71.9

32.2

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

72.8

0.51

67.2

43.4

Minor 5ss

38.6

-1.3

3.1

51.6

45.1

Minor BPS

67.9

0.42

1.7

71.02

42.7

Associated Gene:

Gene:

RASGEF1A

Ensembl Gene ID:

ENSAPLG00000005188

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005386

9389214 - 9433118

43905

ENSAPLT00000033990

9389214 - 9434400

45187